One of the quakes, which was registered at 00:21 a.m. local time (20:51 GMT on Friday), shook parts of the suburbs of Haftgol in Khuzestan, south-west Iran, the official news agency IRNA reported.
The second quake, which occurred at 00:44 a.m. local time (21:14 GMT on Friday), jolted the suburbs of Raz in North Khorassan, north-east Iran.
There were no immediate reports of any casualties or damage to property.